Ok i believe this is the last time bit of bugs to be found (for now) and this time i will compression them down a bit here so i don't chain forever.
Ok a easy one first the is donate to the Library there is a mishmash with the cost as the Librarian says 300 and Mina says 500 (i assume one was changed recently but not the other).
The second one is Beth scene when you go to her house for the First time without a Elasticity Elixir and leave time will pass (it didn't pass for anybody else only her).
The third one is that the Vine plant doesn't pass time sometimes when exploring and running in to them (i think it's when you find them with out the ability to harvest pollen) i could not repeat this (i think i confused time with stamina not going down)