I'm absolutely ecstatic over this comment. It's pretty much exactly how I hoped it would be received. Thank you!
I was worried that no one would want to put the time in to get ending A. I'm very happy to hear I was wrong. ^^
I had the Barbara launch happen to me once or twice while testing, and noticed alot of the other hiccups you mentioned, but the fixes weren't obvious, and they didn't break the game, so it ships!
As for the future of the series, I do think there will a BP3 eventually, as there are still alot of things I want to do with the IP, but for now I'm going to work on something else.