Some of the scenes on the cargo elevator are missing chunks which causes missing or repeated texture loads in panorama. The files were run through an automated process, but I think I need to get a clean source. The one that is live is actually from an installed Morpheus installation directory that is 15+ years old. Need to try again from a clean CD pull. I have higher quality versions of most of the assets, but they need additional pre-processing before I can stuff them through this same process.
You could try running them all through some kind of photo editor like Photoshop with its batch functions to re-save them out as jpgs or pngs. (You could also adjust mass-sizing for newer screen ratios if you needed) As for the issues I had, here's a screenshot of one doing the "Windows XP" style window glitch.