Thank you for the kind words, and yeah, I really try to carry the consequences of choices through the story, it's a big part of what I aim for, even if it can be difficult at times to balance them all :).
As for the parts you've missed, these are the hints to get to those pieces of content:
Tribal - Intro > Do not leave with Kate > Make all the wrong choices when preparing for the Tribe attack > Tribal route
Mage - Intro > Leave with Kate > Do not join the Mercenaries > Scream when the bandit corners you in the alley > Mage route
Hope that helps and hope you continue to enjoy the game :)