Hello, I started playing on version 0.39.1, and moved to 0.40.2 recently (then attempted it again in 0.40.3).
I know church joining conditions have changed, but I'm not really sure if it's a bug. Petrus keeps telling me where the church is located instead of giving me a test like the questlog tells me. I read the notes on all three shrines, but it doesn't change Petrus' dialogue at all.
I go there, but the church's entrance is locked (as it always is when you start the game). I tried throwing silver inside the tree hole as I did in 0.39.1 to open it, but to no avail, as it just wouldn't open up the option to throw silver inside it.
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Maybe I'm just being stupid and I'm doing something wrong, I just thought to report it just in case.
I couldn't enter the church normally since moving from 0.39.1 to 0.40.2 either, but I had already joined the church in my previous save, so I just kept going to the church through the rope near the hideout, since Helena opened up that entrance for me. I can't go through it in my new save though.
A bike related bug too. This one thing happens to me in 0.39.1 as well. While the game doesn't even let me near a cave entrance with the bike, I can get stuck in certain entrances, like at the entrance of Tadeas' house in the swamp. If I get off the bike and move from the entrance, I just can't retrieve the bike, because moving to that tile would make me enter the house, and exiting the house will still put me in front of the tile the bike is stuck in.
Maybe adding a door there would fix that issue, as you can't open house doors when riding the bike.
Also, not really a bug, but something I found funny. You can enter the shower when riding the bike. Nika will ride the bike inside it, take a shower, and get out, still riding the bike. I don't think that was intended, but it is very funny.