Had a minor panic but everything is good now.
TLDR: It was borked but now its better (i hope)
It turns out that your game has a package.json file in it that directs your save to where everything else is in your game. My version of that json file had set itself to point to a target the "www" sub folder, which made it so that when I used playtest to test the game it would use the files in that subfolder instead of the main folder, but the main folder was where the updates so . . .