That is currently being entirely reworked as that does invalidate multiple playthrough options and limit player versatility.
Viewing post in Aric's Expansion Rebred
Ah, good to know. Breeder is the only play through I haven't done yet, and with all of the changes with the Farm and stuff I was thinking about finally getting around to running one, but then I was starting to think maybe it wasn't going to be a good idea, especially since I really like almost everything else the additions give to the game.