What exactly it's happening?
Does the screen froze and then it move again and it skip some frames? I've notice that on my Ouya on my game and in others and sometimes it happends when the Ouya is trying to connect to the Wi-Fi, but stabilize after a while or you can turn the Wi-Fi of the Ouya off.
If you mean the screen scrolling left and right, that's how the game works, to keep the purple ball in the center of the screen, also it's important for other stages that are wider.
Tell me what do you mean by screen jerking to be able to give you better support or try to reproduce the problem on my Ouya soo I can look for a solution.