They will, yes! Well, some of them.
Ah, ok. I played through once with saves at most of the choices, then decided to go back and replay with the other choices since the game isn't too long yet. But I was confused when the differences were pretty minimal.
BTW, I do really like your writing style. It's written like someone would actually talk, even in narration, so you can really feel what the MC is feeling. Most VN writers don't have much success with that.