Unfortunately, if the build was too old they won't carry over to later versions. For the DLCs, were the files re-downloaded and added to the new folder for the updated build? If old files are being used or the DLCs weren't put in the new version than there will be errors for them.
Viewing post in Our Life: Beginnings & Always - Step 3 DLC comments
If the game suddenly closed and then things were gone, unfortunately I don't think that's an update issue. Something went wrong while running it and it's possible your info was corrupted in the process. Downloading the DLC files again will hopefully get them back to normal at least, but I'm not sure if there's a way to regain the lost info.