Yes it's Lilith the first hint I got something was wrong was when the cut scene showing her full of eggs played before I ever faced her. Then when I did face her her sprite was that of demon eggs. Played through to the part were the goddess invites us to her temple but I had been going there for a while. I uninstalled and reinstalled the game and restarted from the beginning. I had made a bug report about this very thing and that's were the information about how to play through it came from. Another bug that shows up later you will want to avoid is using the fertility blessing attack on the Pyramid boss fights, it causes errors but that is near the end of the current version of the game.