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I stated playing this on windows, how do I update my old game file (0.5.9) with the new one 0.6.1? I have never updated a game before on PC that had to be downloaded as a zip. Please help

You delete old game folder and exctract new version to new folder. After starting new game version it should work for most games. So don't empty recycle bin before starting new game, some games expect you to move folder with saves manually but not this one.

thanks, it worked! Do you know how to do this for Android? 

From what I know you must install new version on top of old one (just download new version and install it, don't delete old one or it will remove saves). I didn't test it but it is how most of android games on renpy behave.