Try making a copy of your project and stripping it down to the smallest deck that still exhibits the problem. Remove all the cards, scripts, modules, contraptions, etc you can, a few pieces at a time, until you narrow down the conditions of the bug.
In the process of removing things you might discover the answer on your own, and if not I can take a look at your simplified example. It's always possible there's some sort of bug in Decker itself.