I remember seeing this a while back and giving it a pass, but wow has Twine come a long way since I first started seeing it used for game development. It feels like y'all have got a good grip on making this program do what you want.
It's a testament to the writing that I can appreciate how the kinks are presented in game even though under normal circumstances most of what is focused on does nothing for me. It's also just kinda refreshing for submission to not just be a mechanic used to punish the player. Y'all are doing great and I can't wait to see where this goes.
(I personally found that zooming out some has helped a fair bit with UI elements and text clipping off screen, though the text does become somewhat more difficult to read when shrunk in such a fashion.)