Initially Unity did state the new Runtime Fees were going to be applied retroactively to all games that came out before the policy change, now that's up in the air because of the backlash. If your concern is whether or not Unity will completely ditch the policy itself, I have no idea if it is definite. I believe they're still going to try to go through with the Runtime Fee policy given the current leadership of Unity Technologies, John Riccitiello, or try to do it another way. Take caution with trying to use Unity long term now.
This is Unity's page on the new policy, I wouldn't doubt there will be a sneaky change in the future. Just be on the lookout for any new updates from other sites.
https://blog.unity.com/news/plan-pricing-and-packaging-updates
This is the thread about the policy on Unity's own site.
https://forum.unity.com/threads/unity-plan-pricing-and-packaging-updates.1482750...