I have an Android phone and love to play Spelunky so I got a steelseriesxl to play it on every time I hit joy config it messes up and won't let me input anything so I have to restart the app I can only press X B and select and it only works like pressing B but it doesn't work to play just to skip the intro and go back or go to menu I love playing this and bought a whole controller for it but it won't work the only thing it does work is it let's me click keyboard config and i press the buttons 

Gamepads should work out of the box. Try clearing app data. Another option is to try the html5 version. If it still doesn't work, you're out of luck. Even if I wanted to (and I don't ), I can't fix controls for the gamepad that I do not have.

Also, check (and maybe contribute to) this topic.