1. Rock doesn't always win.
2. What's with all the wasted space on the right? Just put the upgrades there and you don't need to scroll.
3. Game doesn't run in the background (separate window).
1) Eventually! It's the end game for each prestige (only first 1 is really functional currently -- more coming soon!).
2) I went through great lengths to support mobile this time and it came at the cost of the desktop experience. I will improve this in the future -- I share in your pain.
3) I'm not sure if I have any control over this. It seems whenver the game is not in the foreground it stops working. I will look into this though.