Spoilers for the Pyramid content in this post
Some statues have their tops clipped
When you go over spirit capacity in the pyramid it doesn't reset your sprite. It tries to play a walk animation for the immobile sprite state and goes all weird. Half of the time its just invisible. Also some statues don't reset the sprite either, making it look like you are walking around with 4 spirits when you actually have less or none.
Leah has a blank skill that can be used but has no effects.
When pop up dialogue (the type that doesn't interrupt gameplay at the top of the screen) is too long, it just gets clipped off the right side of the screen. I noticed it with the pyramid queen but I think it happens with anyone.
There is some collision that stops you from getting this chest in the mines under the pyramid.
Birth 1&3 skills seem to just be missing. I can have power 300 300 and 100 and not be able to produce any seeds.