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I've been playing with the Patreon version so I think a lot of the quests I mentioned should be available now.

I haven't done much with melee combat (I was trying to go 100% magic but I had to spend a ton of stats on appearance to beat Arihama without anyone dying lol), but training with Feraldo is supposed to unlock a bunch of melee skills, if you haven't already done so. The best armor is still the dragon-y graul scale armor, the only other sets available are the default gear, lust gear, fancy attire, and the mage robe you can get from signing up to magic university. I usually bring my companions with me when I can, especially earlier on in the game.

The personality/job modules for "Chip" make him good at almost every Galactic Union quest. From there you just assign whoever is best to each job and try to get as high percent as you can, and weapons/armor can help too if needed. Most quests let you bring several people but I recall there was a tough one or two that only lets you bring one or two people, so the highest percentage you'll get there is probably like 50%~ or so.

Becoming Feraldo's "Omega" essentially just means becoming his submissive lover. Yeah I'd say he's a touch obsessive lol, but he also has a very sweet caring side that extends even beyond just the protagonist. You can see his sweeter side a lot more in several spots, like when he saves you (even if you reject him) if you lose your fights against Zyron (and others) while he's looking out for you at Akra, or during the conversation you can have with him about Katari and his jokes. Also if you spy with the cameras in the lunchroom, he has a conversation with Skru'vaks where he's specifically looking out for the protag. There are also glimpses to that side of him during the beach party on Sythyria, especially when he riles up a depressed Bradley with a rivalry to give his life purpose again. Sometimes it's subtle due to how he acts on the surface, but I actually think he's probably the most caring companion in the game, even Arthur finds him pleasant lol. I'm playing a female protag so m-preg doesn't quite apply to me, but either way I'm immediately having his babies whenever pregnancy becomes a thing lol.

Nope, the Remember quest can't be finished at the moment as far as I know. According to the dev, it sounds like genetic material can eventually be converted into stat points or something, but that isn't implemented currently (or anytime soon, judging by how slow the updates seem to be).