Hi! This took me a bit longer to get to than I was expecting, but some progress has been made.
Just posted a new build that adds the option to save maps as a series of separate images and the ability to re-order maps.
Hold shift and click map up/down buttons to the current map up/down in the map order. Not quite as slick as dragging and dropping them in the preview window but it should give you something to work from until I can get time to code that bit of magic up. :)
Image sequences are named 'selected_filenameXX.EXT' where XX is the map number and EXT is the file extension of the selected file (default is png). Hope that works for you.
Thanks again for the feedback!