about number 2 and 3:
2) Stamina system is pretty bothersome, I'd like to suggest more Invincible Frames for most of the Bosses, since as you said, the cursed sword just melt them all. Or just reducing the attack speed of that weapon.
3) The main reason according to the Dev about Nene laying eggs instead of an actual baby, is to avoid problems with platforms like Steam due to the inclusion of actual children in the game.