Jungle:
lone spirit: when you retake control of leah before you reach the village to the middle left of the lama territory in front of a stone structure.
Ancient belly piercing recipe: top left of the lama territory in a red chest on the edge of the cliff.
Arena queens spear recipe: in the human territory area to the right of the village entrance underneath the arena pit. (Note: any items that appear her are only available on second visit.)
Witches academy: (Note: this area has a unique time of day system and so each item, interaction, and side quest will be listed based off when it can be first started furthermore at night you can play as val to plant seeds all over the place but there is a 5 seed limit to how many seeds you can do per night, rather than listing out all the locations val can plant seeds I will instead list how many seeds you will need to have place in total to place them all.)
waygate is located at the front gate. (Note: this waygate is available even before visiting the royal city for the first time however it is impossible to enter this area until after the jungle even if you acquire a recommendation earlier from the witch in the royal city slums' bar.)
Total unique items #:
anytime:
lone spirit: located in the basement of the apprentice hall to the far right.
morning:
noon:
evening:
night:
nightshade: front yard of the school, all the blue flowers.
Total special interaction #:
morning:
noon:
bonus mirror: in mirror class for puzzle 1 and 2 you can locate a student in front of a purple edged mirror, they will note the oddity of the mirror before it brakes and they become pregnant. starting from the room with val for the first one go middle, right, right, middle, left, middle, right, right, middle, middle to reach the student then the second one go right, middle, left, middle, middle (Note: for the fire above the mirrors it doesn't actually indicate which way the mirror will go, as if you go through the left blue fire mirror in the room with val you go left but then go through the same mirror in the room you get teleported to you go forward one instead so i listed it as mirror position not fire color.)
evening:
whip enthusiast: at the back left most room you can find a student standing in front of a whip on the wall, saying to her you like whips will result in her taking you at night after you go to bed, event ends with her a bit rounder. (Note: the val portion of the night time sequence will be skipped if this event plays.)
future trouble: when reading the future in fortune telling class every character will have the most unique/ interesting interaction with the bottom most option.
night:
restored sign: on the first floor foyer to the left are 3 placers talking about previous headmistresses, at night the third placer is restored and you can read it.
cultic meeting: in the basement area of the apprentice wing next to wear you find the lone spirit chest is a hole, look through it to see a meeting cult meeting.
Total side quest #:
morning:
you've got a friend in ya: also avaliable tell the evning: in the adept dorm go to the bottom right dorm room filled with plushies, the girl will give you a tour before asking for a favor, get a book from the top right corner of the library, some nightshade at night outside in the school grounds, and special seeds from the grounds keeper house to the left of the school grounds area, return them to her and she'll ask to meet at night in the adept dorm basement, meet her at the far left of the area to complete the quest, reward: Luna's quill.
noon:
evening:
witches duel: in the magic battle area to the right on the second floor standing in front of the entrance to the dueling platforms is a noble girl witch who will challenge you to a duel, accept and defeat her to earn an item witch battle pin (Note: unlike the pie eating contest of lady luck's casino you can only receive one of this item)
night:
a milky formula: in the basement area of the apprentice dorm in the room to the right you can find a cat girl looking for a rare milk fruit to make a potion, talk with them to start the quest, give them a milk fruit to complete the quest.
pregnant chaos: as val you can plant 5 seeds a night up to 22 seeds in total. (Note: not all locations where you can plant seeds is available at the start and requires access to the adept level areas top plant all the seeds.)
(Note: after beating the area you'll get a cultists key, this can be used to enter a temple to the right of the royal city between it and the cowgirl farm, there is nothing you can do here currently but it is an interesting thing to see.)
Brasswal/fishermen town: (Note: this area and fisherman town are the most recent places made brasswall only has a crystal and spirit you can get from here outside of the main story and fisherman town only has one quest and another lone spirit related to heading to brasswall hence why despite being able to access the place after damia's temple appeared i didn't mention it tell now.)
waygate located strait ahead from the entrance in front of the giant clock.
Crystal: clockwork: located in the underbelly of the city at the back middle of the location through a wooden door (Note: requires the clockwork key acquired by completing brasswalls story)
lone spirit: located in the wagon shop to the top left of the area.
lone spirit: located in the house directly next to the dock.
dad's coming home: in the fishermen town you can talk to a little girl at the docks, if you chose to stay a night after this interaction a cutscene will play at night with leah and the girl, after this head to brasswall and talk to the man outside the city and he'll go home, return to the fishermen town and go into the house with two doors at the bottom middle of the area and talk to the man again then leave the house to complete the quest.
(note: only side quest, points of interest, and various unique scenario will be listed as the game does a great job of letting you know where to go and what to do and main shops are clearly marked, shops will only be mentioned in relation to unique items or side quest.)
(Second note: holding down the confirm button makes any dialogue or cutscene in half. etc. birthing demon eggs in the demon temple)