Very interesting premise! I love sci-fi, especially with settings that first appear mysterious and involve A.I.s that potentially operate under dubious morality. My favorite part of this story was actually the start, before we meet Jake. I found those sections were the most interesting and provided a good view into life on the ship. Towards the end, however, things felt a bit rushed and I found myself looking for more answers. That said, writing a story of this length in a month is incredibly difficult, and the fact you wrote as much as you did, alongside coding, is incredible! With a little bit of polish, this story could be incredible!
I did also notice that there were some shifts from second person POV to first person POV that were a bit jarring at times, alongside a few formatting errors (like "/" showing up) and issues where I wasn't able to click choices due to errors (notably occurring down the branch of resisting the voice in the pod and the stasis pod area where you check on the woman who works there). Other than those minor issues, loved the game and found the story quite fascinating! Would love to give it a try again if it's updated in the future.